OBO Foundry dashboard analysis¶

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/tmp/ipykernel_4678/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    28
Turtle            26
unknown            2
OWL/XML Syntax     1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 54 6070.017544 20526.953349 0.0 159.0 1234.0 2777.0 124680.0
Declaration 54 1195.666667 3306.077755 0.0 90.0 410.0 885.0 22818.0
SubClassOf 52 1535.473684 4469.689347 0.0 21.0 344.0 1108.0 24611.0
ObjectPropertyRange 49 33.122807 33.632505 0.0 12.0 25.0 41.0 144.0
ObjectPropertyDomain 48 30.894737 33.359344 0.0 8.0 22.0 41.0 133.0
DataPropertyRange 43 12.298246 18.738773 0.0 1.0 5.0 16.0 97.0
SubObjectPropertyOf 42 51.228070 68.225995 0.0 0.0 26.0 64.0 284.0
InverseObjectProperties 40 11.859649 26.011974 0.0 0.0 2.0 11.0 126.0
DataPropertyDomain 39 11.877193 32.887291 0.0 0.0 2.0 6.0 235.0
DisjointClasses 39 235.315789 1624.432903 0.0 0.0 3.0 20.0 12277.0
ClassAssertion 37 128.491228 376.786702 0.0 0.0 3.0 26.0 1952.0
EquivalentClasses 34 156.824561 812.631772 0.0 0.0 3.0 66.0 6147.0
TransitiveObjectProperty 31 4.122807 6.606464 0.0 0.0 1.0 6.0 32.0
SubDataPropertyOf 27 6.543860 11.986704 0.0 0.0 0.0 10.0 63.0
SubAnnotationPropertyOf 27 13.000000 33.803529 0.0 0.0 0.0 14.0 228.0
FunctionalObjectProperty 24 2.578947 4.212852 0.0 0.0 0.0 4.0 17.0
FunctionalDataProperty 23 1.842105 4.039048 0.0 0.0 0.0 2.0 22.0
InverseFunctionalObjectProperty 21 1.736842 3.142601 0.0 0.0 0.0 1.0 12.0
IrrefexiveObjectProperty 19 3.228070 6.267882 0.0 0.0 0.0 1.0 22.0
SymmetricObjectProperty 19 3.245614 6.285700 0.0 0.0 0.0 6.0 35.0
AnnotationPropertyRangeOf 18 5.754386 18.675118 0.0 0.0 0.0 2.0 134.0
AsymmetricObjectProperty 17 2.649123 5.400037 0.0 0.0 0.0 1.0 20.0
ObjectPropertyAssertion 16 263.017544 1378.789978 0.0 0.0 0.0 2.0 10226.0
DataPropertyAssertion 14 109.456140 504.394477 0.0 0.0 0.0 0.0 3617.0
DisjointUnion 12 5.719298 17.359389 0.0 0.0 0.0 0.0 116.0
SubPropertyChainOf 10 3.175439 16.132402 0.0 0.0 0.0 0.0 120.0
ReflexiveObjectProperty 8 0.175439 0.504367 0.0 0.0 0.0 0.0 3.0
AnnotationPropertyDomain 7 0.228070 0.866387 0.0 0.0 0.0 0.0 6.0
DifferentIndividuals 6 0.333333 1.185227 0.0 0.0 0.0 0.0 6.0
EquivalentObjectProperties 6 1.122807 4.993103 0.0 0.0 0.0 0.0 36.0
DisjointObjectProperties 5 0.350877 1.395032 0.0 0.0 0.0 0.0 8.0
SameIndividual 3 0.543860 2.570924 0.0 0.0 0.0 0.0 17.0
Rule 3 0.649123 3.487177 0.0 0.0 0.0 0.0 25.0
EquivalentDataProperties 3 0.333333 1.550729 0.0 0.0 0.0 0.0 10.0
NegativeObjectPropertyAssertion 2 0.035088 0.185637 0.0 0.0 0.0 0.0 1.0
DatatypeDefinition 2 0.350877 2.517732 0.0 0.0 0.0 0.0 19.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 55 5265.649123 14254.202996 0.0 197.0 1218.0 4302.0 78469.0
ObjectUnionOf 38 14.912281 22.530361 0.0 0.0 5.0 13.0 88.0
ObjectAllValuesFrom 34 27.964912 60.584936 0.0 0.0 5.0 38.0 400.0
ObjectSomeValuesFrom 32 427.754386 2202.226919 0.0 0.0 6.0 118.0 16614.0
ObjectIntersectionOf 30 139.473684 823.835349 0.0 0.0 1.0 19.0 6217.0
ObjectExactCardinality 29 9.719298 26.140250 0.0 0.0 1.0 5.0 115.0
DataExactCardinality 21 2.298246 4.148859 0.0 0.0 0.0 3.0 18.0
DataHasValue 19 30.175439 77.090884 0.0 0.0 0.0 8.0 494.0
DataAllValuesFrom 17 0.947368 1.816797 0.0 0.0 0.0 1.0 8.0
ObjectComplementOf 16 5.087719 23.892827 0.0 0.0 0.0 1.0 179.0
ObjectHasValue 15 9.368421 32.860980 0.0 0.0 0.0 1.0 189.0
ObjectMinCardinality 14 1.438596 4.301235 0.0 0.0 0.0 0.0 28.0
DataSomeValuesFrom 13 1.385965 3.347464 0.0 0.0 0.0 0.0 17.0
ObjectOneOf 11 13.105263 54.673604 0.0 0.0 0.0 0.0 272.0
ObjectMaxCardinality 9 16.526316 118.373517 0.0 0.0 0.0 0.0 894.0
DataMaxCardinality 5 1.578947 8.387804 0.0 0.0 0.0 0.0 61.0
DataMinCardinality 4 0.298246 1.860923 0.0 0.0 0.0 0.0 14.0
ObjectHasSelf 1 0.017544 0.132453 0.0 0.0 0.0 0.0 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
35 PATO 0.348 0.556 0.140
17 FOAF 0.342 0.333 0.351
30 OBO 0.338 0.571 0.105
37 PROVO 0.304 0.504 0.105
19 IAO 0.300 0.600 0.000
31 OEO 0.285 0.571 0.000
49 enanomapper 0.285 0.571 0.000
22 MDO 0.285 0.571 0.000
0 AMONTOLOGY 0.285 0.571 0.000
8 EMMO 0.275 0.549 0.000
4 CHAMEO 0.275 0.549 0.000
10 EMMO_BattINFO 0.275 0.549 0.000
13 EMMO_crystallography 0.275 0.549 0.000
38 QUDT 0.275 0.549 0.000
15 EMMO_mechanical_testing 0.264 0.527 0.000
2 BWMD-MID 0.252 0.504 0.000
3 CCO 0.252 0.504 0.000
1 BWMD-DOMAIN 0.252 0.504 0.000
41 SEMMD 0.252 0.504 0.000
14 EMMO_mappings 0.252 0.504 0.000
12 EMMO_atomistic 0.252 0.504 0.000
40 SAREF 0.241 0.482 0.000
50 m4i 0.241 0.482 0.000
32 OM 0.234 0.467 0.000
44 SP 0.234 0.467 0.000
16 EMMO_microstructure 0.234 0.467 0.000
43 SO 0.234 0.467 0.000
21 MAMBO 0.234 0.467 0.000
6 DEB 0.234 0.467 0.000
46 UO 0.234 0.467 0.000
27 NPO 0.234 0.467 0.000
29 OA 0.222 0.444 0.000
52 mvc 0.222 0.444 0.000
7 DISO 0.222 0.444 0.000
5 CIF 0.222 0.444 0.000
26 MaterialsMine 0.222 0.444 0.000
36 PMD 0.222 0.444 0.000
25 MatOnto 0.222 0.444 0.000
9 EMMO_BVC 0.222 0.444 0.000
28 NanoMine 0.222 0.444 0.000
24 MSEO 0.222 0.444 0.000
18 GPO 0.222 0.444 0.000
20 LPBFO 0.219 0.438 0.000
23 MOL_TENSILE 0.208 0.416 0.000
54 opmw 0.200 0.400 0.000
47 WILD 0.200 0.400 0.000
34 P-Plan 0.200 0.400 0.000
55 periodictable 0.200 0.400 0.000
42 SKOS_MDO 0.200 0.400 0.000
45 SSN 0.189 0.378 0.000
33 OSMO 0.189 0.378 0.000
39 QUDV 0.167 0.333 0.000
51 matinfo 0.167 0.333 0.000
53 ontorule 0.155 0.311 0.000
56 ssos 0.155 0.311 0.000
11 EMMO_Datamodel 0.000 0.000 0.000
48 bmo 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 57.0 0.231018 0.061130 0.0 0.219 0.234 0.264 0.348
score_dash 57.0 0.449579 0.111476 0.0 0.416 0.467 0.504 0.600
score_impact 57.0 0.012298 0.052819 0.0 0.000 0.000 0.000 0.351

OBO dependency graph